Synthetic Lethality: Outmanoeuvring the cancer genome
Read time: 4 mins
20 September 2021
While the concept of synthetic lethality was first described in 1922, it was not until 2005 when the discovery of the first synthetic lethal interaction was able to be translated into the clinic for patients with cancer ,,,. This paved the way for a new wave of genetically selective cancer medicines that largely leave a patient’s healthy cells unharmed.
Synthetic lethality is a new strategy for developing anticancer therapies where the functional loss of individual genes are tolerated in isolation but not in combination. It happens when a combination of deficiencies in the expression of multiple genes lead to cell death.
Synthetic lethality can be applied in drug discovery to develop medicines that target specific genetic mutations expressed only in cancer cells, and not present in normal cells. Genetics play a heavy role in progression of the disease; therefore, patients who would benefit the most from a synthetic lethal therapy can be preselected based on their genetic profile, increasing the likelihood of response and reducing toxicity.,
What is synthetic lethality?
Synthetic lethality is a new strategy for anticancer therapies where two genetic abnormalities that act independently and are not lethal become lethal when combined in the same cell. It happens when a combination of deficiencies in the expression of multiple genes lead to cell death.
Watch time: 1 mins
Exploiting pro-cancer mutations to develop anticancer medicines
In cancer, the concept of synthetic lethality applies to pairs of genes. Tumour suppressor genes are genes that control cell growth. The loss of ‘tumour suppressor’ gene function is a central mechanism to turn normal cells into cancer cells, often by causing or allowing a large number of mutations in the genome. Tumour suppressor gene loss is not something that we can target with medications, as the genes themselves are often already mutated or deleted in cancer and therefore anticancer medicines cannot directly interact with them.
As tumour suppressor genes cannot be directly targeted, we can leverage synthetic lethality by targeting the gene partner. We target the gene partner with a synthetic lethal drug to inhibit its function; this leads to death of cancer cells whereas normal cells that retain function of the related tumour suppressor gene are spared this effect. Identification of druggable synthetic lethal partners is currently the only way of targeting the functional loss of tumour suppressor genes in cancer.
The first synthetic lethal interaction found in cancer was between poly (ADP-ribose) polymerase (PARP) and tumour suppressor genes BRCA 1 and 2. Gene products of PARP and BRCA1/BRCA2 normally function to repair DNA damage. During the development of certain cancers, genes such as BRCA1/BRCA2 are mutated and non-functional, which limits the repair of DNA in these cancer cells to only utilising PARP. If we use a PARP inhibitor, we can make PARP repair non-functional and the cancer cells sensitive to cell death; this is a practical example of synthetic lethality, which largely spares a patient’s healthy cells.
Research underpinned by the search for genetic interactions
In order to discover new synthetic lethal gene pairs, we need to use new technologies that change our approach and enhance our ability to understand the research in the space. When you consider the exponential number of potential synthetic lethal gene pairs in the human genome, this requires an approach that collects vast amounts of data.
For many years, data was obtained through genetic screening for loss-of-function mutations in yeast or by use of genetic tools in human/mammalian cells, however these technologies were limited by the reliance on conserved genes (those that have been unchanged throughout evolution and are present across species), or inaccuracies when experiments were scaled up.,,, Today CRISPR (clustered regularly interspaced short palindromic repeats)-based tools and libraries offer a path forward, where ‘hits’ (i.e. potential drug targets) can be generated, and the patient population expected to benefit from inhibiting each target is already known.
Building synthetic lethality from concept into reality at GSK
CRISPR-based tools have revolutionised the discovery of several synthetically lethal combinations that are currently in clinical trials. This progress demonstrates the potential of CRISPR technology to dramatically alter cancer target discovery and create a wave of new therapeutics over the next decade.,
At GSK, our industry-leading synthetic lethality research unit is working to advance our preclinical programme capacity while further understanding the underlying mechanisms of synthetic lethality drug resistance. Our larger vision in R&D is to identify novel targets in drug-resistant patient populations, underpinning our goal to deliver potentially transformational medicines in oncology.
In June of 2020, GSK and IDEAYA Biosciences formed a strategic partnership to advance three novel synthetic lethality assets, including as monotherapy and as combinations between GSK and IDEAYA programs. This partnership enables compelling potential combinations and the opportunity to build an industry leading pipeline that targets molecularly defined populations in several major solid tumours. The collaboration has the potential to bring the next generation of innovative precision medicine therapies to patients utilizing the approach of synthetic lethality, and could have meaningful impact for the clinical care of patients with lung, prostate, breast, colorectal and ovarian cancers.
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